Protein Details: Glutamate receptor ionotropic; NMDA 2A

Protein ID

ICDB_Pro_0101

Protein Name

Glutamate receptor ionotropic; NMDA 2A

Gene Name

grin2a

Organism

Xenopus laevis (African clawed frog)

Length

1451 amino acids

AlphaFoldDB

AF-B7ZSK1-F1-model_v4.pdb

Function

Component of NMDA receptor complexes that function as heterotetrameric; ligand-gated ion channels with high calcium permeability and voltage-dependent sensitivity to magnesium. Channel activation requires binding of the neurotransmitter glutamate to the epsilon subunit; glycine binding to the zeta subunit; plus membrane depolarization to eliminate channel inhibition by Mg(2+). Sensitivity to glutamate and channel kinetics depend on the subunit composition (Probable). Plays a role in dendritic branching in brain neurons and in synaptic plasticity. Participates in the synaptic plasticity regulation through activation by the L-glutamate releaseed by BEST1; into the synaptic cleft; upon F2R/PAR-1 activation in astrocyte (By similarity).

Sequence

MGMFVLLLYTFLYAGDLGHGAEKSFPVLNIAVILGRTRYITERDIRSLWTRDMSLDFDVNVVTLLVNQTDPKSIITHVCDLMSGTKIHGVVFGDDTDQEAIAQILDFVSSQTFIPILGIHGGSSMIMADKDEMSTFFQFGASIKQQATVMLNIMEEYDWHVFSVITSNFPGYRDFISFIKTTVDNSFVGWEVQNYITLDTSYTDAQTLTQLKKIHSSVILLYCSKDEATYIFEEARSLGLMGYGFVWIVPSLVTGNTDIIPYEFPSGLVSVSYDDWDYGIEARVRDGLGIITTAASAMLEKHSVIPEAKTSCYGQNERNDPPLHTLHNFMINVTWDGKDLSFTEDGYQANPKLVVLLLNMEREWEKVGKWENKSLNMKYPVWPRITASLDSDHDDNHLSIVTLEEAPFVIVENIDYLTGTCVRNTVPCRKYFRLNNSTTEGTSVKKCCKGFCIDILKKLSKTVKFTYDLYLVTNGKHGKKIKNVWNGMIGEVVYKRAVMAVGSLTINEERSVAVDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLLVSAMAVFIFEYFSPVGYNRNLAQGKDPHGPSFTIGKAVWLLWGLVFNNSVPVQNPKGTTSKIIVSIWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDNKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPDMHQYMVKFHQKGVQDALVSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIALQKGSRWKRPIDLALLQFVGDGEMEELEKLWLTGICHTEKNEVMSSQLDIDNMAGVFYMLAAAMALSLITFVWEHLFYWKLRFCFTGVCTGTPGLLFSISRGIYSCIHGVHIEEKKKSPDFSFTASQTNMLKLLRASKNIANLSNLNQSQCNSPKRTSDYIQRNSLLTDMVLDKGNLTYSDNRPFQQKDIYSENTYDLAMLSANCPKDNLNNYVFQGQHPLTLNESNPNTVEVAVSAEAKVNTRPRQLWKKSVETLRQTQGSVNENGTEESKSSIKNQRFLPEDGHFSDVSEASSRATCHIDSENNNKHRKSKDNLKKRPVSAKYARECSEVELSYLKIKHGPNRDKVYTIDGDKEPSFIMDQPKYSENSPDQDDEDYPDVYQDHNDNYRKTEPLQSDRTPLHSEGRLPNNDIQYKLFSKHYNLKEKNTSMSDANDRHRQNSTHCRSCLSNMPNYTGHYTARSPYKCDDCLHTGKLYDIDEDQMLHEAANSMHSEDFYEHNWLENNALHFQKKNKLRINRQHSCDNINKPREHDLGRPPRSLSLKEKERYIQENPFAKFVIVPPEKLLGNNASLFTDSLKDSKRSKSLYPDNSSDNPFLHSYQETQKLSHGRSSSDIYKQSSLPKARNDNYLRSSIKSTTSYSSRDGRVPDDMCVSEYALPYVTSNNSVYSAPRVVNSCSNRRVFKKMPSLESDV

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

BINDING 120; /ligand="Zn(2+)"; BINDING 274; /ligand="Zn(2+)"; BINDING 503..505; /ligand="L-glutamate"; BINDING 510; /ligand="L-glutamate"; BINDING 681..682; /ligand="L-glutamate"; BINDING 722..723; /ligand="L-glutamate"

Disease

Location

DOI ID

10.1523/jneurosci.5078-07.2008; 10.1126/science.aal3729

RefSeq

NP_001106367.1

Feature